PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01050-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 464aa    MW: 52173.9 Da    PI: 5.4876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01050-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19217267256
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  augustus_masked-scaffold01050-abinit-gene-0.6-mRNA-1 217 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 267
                                                           59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.80E-34216276No hitNo description
SuperFamilySSF541717.19E-23217275IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-32217275IPR001471AP2/ERF domain
PROSITE profilePS5103222.998217274IPR001471AP2/ERF domain
SMARTSM003801.5E-40217280IPR001471AP2/ERF domain
PRINTSPR003678.4E-11218229IPR001471AP2/ERF domain
PfamPF008472.8E-12218267IPR001471AP2/ERF domain
PRINTSPR003678.4E-11240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAAAKNSGKS KKGVDESHSM IQNWDIDKGK DHDFGTERRQ WKQFFDEASM SNRPLKKIRS  60
PERQDPIQSS ASLAHQTPPF SIPNPLTPST ASSRIVFPFA FDGSQQSFPF TQQYGTTTLP  120
MYHPPPLQVP QINQQQMISF GTNQQLQQQQ QSNAYPPPLL GGDMALSQQQ QQQQVLQYWS  180
DALNLSPRGR MMMMNRLGPD GRPLFRPPVQ PINTTKLYRG VRQRHWGKWV AEIRLPRNRT  240
RLWLGTFDTA EDAAMAYDRE AFKLRGENAR LNFPEHFLNK DKAVSTAPSS TTSSPPTPHE  300
SSRRSRYSKQ PEQAPEEFNL QDLNMETMPP PPKPLPLPQT QEDNPDSDSG LGSSEVMTGD  360
EVQAIAGDGE AGEGVSQSQE LVWGEMQDAW FNAIAAGWGP GSPVWDDLDT TNNLLLQSQV  420
PFGNQNQQEF NDSYLQRQQE NLGSACSSSS SSCPMKPFFW KDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20216274160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886441.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2I4H4440.0A0A2I4H444_JUGRE; ethylene-responsive transcription factor ERF054-like
STRINGEOX993820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-51ERF family protein