PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00919-abinit-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 27637.1 Da PI: 6.7106 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 16 | 59 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ augustus_masked-scaffold00919-abinit-gene-0.14-mRNA-1 16 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 59 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 1 | 22 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.61E-19 | 1 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.751 | 11 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 15 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-16 | 16 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.25E-13 | 20 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 23 | 60 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
SCRLRWLNYL KPDIKRGNLT PQEQLLILEL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR 60 VQKQARQLNI ESNSKTFLEA VRCFWMPRLL QKMEQTSSPI STPNCSLTTM NAQGSSTPLS 120 PNPIASSLSP SYIPPRNLLH SESYPTENSS SITSPSIHSS DSLKISELPQ VPEHPAGPFH 180 AFGNTVYNTD CHFVDGSIYN MEALNLDPIS AMGAYQNSLL DCHMADSDWL SDNMAESLWN 240 MNEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-15 | 2 | 65 | 45 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023929640.1 | 1e-162 | transcription factor MYB62-like | ||||
TrEMBL | A0A2N9FPI3 | 1e-131 | A0A2N9FPI3_FAGSY; Uncharacterized protein | ||||
STRING | XP_008243255.1 | 1e-102 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 3e-62 | myb domain protein 62 |