PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00849-abinit-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24761.4 Da    PI: 10.2801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00849-abinit-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-211964449
                                                           -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                                                 SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                                             k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  augustus_masked-scaffold00849-abinit-gene-0.12-mRNA-1 19 PKKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAEKVFSF 64
                                                           5667789***********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-26984IPR002100Transcription factor, MADS-box
CDDcd002656.91E-32978No hitNo description
PRINTSPR004048.1E-171030IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKKRASIGR QKIPIAKIPK KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPAEK  60
VFSFGHPEVE SILDRYLTRN PPPESSAHQL IEAHRTANVR EFNIHLTQIL NQLEAEKKRG  120
EALDQIRKSN QRQFWWEAPF NQLGLHELEQ LRASMEELKK NVVKQANKIL IGSTTNSSQF  180
LAVNGIGSSA DLFENKHAEF NASSTMPNVY NFGYGNGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17893187MEF2C
5f28_B2e-17893187MEF2C
5f28_C2e-17893187MEF2C
5f28_D2e-17893187MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928797.11e-156agamous-like MADS-box protein AGL61
TrEMBLA0A2N9J8T01e-135A0A2N9J8T0_FAGSY; Uncharacterized protein
STRINGXP_004511261.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-61AGAMOUS-like 61