PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00844-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 303aa    MW: 34009.1 Da    PI: 4.7117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00844-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-21113163155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           ++++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+ kl+g
  augustus_masked-scaffold00844-abinit-gene-0.2-mRNA-1 113 TKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTFDTAEEAASEYDKAAVKLKG 163
                                                           69********.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-14113163IPR001471AP2/ERF domain
CDDcd000186.17E-35113173No hitNo description
SuperFamilySSF541712.55E-22114173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-31114172IPR001471AP2/ERF domain
PROSITE profilePS5103224.302114171IPR001471AP2/ERF domain
SMARTSM003801.2E-38114177IPR001471AP2/ERF domain
PRINTSPR003672.8E-10115126IPR001471AP2/ERF domain
PRINTSPR003672.8E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MICFDDPRYS STMYVQPHTV KYSEHKVTTS KLVPDPKAMP SKLVRIIHTD PYATDSSSDD  60
EPERRPVQRI KRHVSEISFE LPSLPSSSQL QKQEVRKKRP AKLPVSAAVT RPTKFRGVRQ  120
RPWGRWAAEI RDPTRGKRVW LGTFDTAEEA ASEYDKAAVK LKGPNAVTNF PNSVMTETSV  180
DVDSVNYEGI DFPASSDVAS SSPISVLRYE ESSPSDEFGF GDVDAFGSDL NVPLNLTNFV  240
LSKKPLVEEV KELEFDDFGF GDVDAFGFGI DGPFNLTDFM LSRKQFVQEE ELFGEFDVDS  300
FLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21115171360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21115171663ATERF1
3gcc_A3e-21115171663ATERF1
5wx9_A1e-201141801481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913007.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2N9J1Q01e-104A0A2N9J1Q0_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s15190.11e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-34cytokinin response factor 4