PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00674-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25420.1 Da    PI: 7.8115
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00674-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.32e-181861245
                                                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                                                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                                           i +++ r+vtfskR+ g++K A+EL++LC+a++ +++fs tgk
  augustus_masked-scaffold00674-abinit-gene-0.7-mRNA-1 18 LITDYRCREVTFSKRKSGLFKSASELCILCGAKIGIVVFSLTGK 61
                                                          68999************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-24968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.105969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-221080IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-151131IPR002100Transcription factor, MADS-box
PfamPF003192.6E-201965IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-153146IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-154667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSMNKAKSKG RQKIENKLIT DYRCREVTFS KRKSGLFKSA SELCILCGAK IGIVVFSLTG  60
KPFCFGNPDI NTIIHQYVSG NPQTNVGIVA IAESLQQATI LELSKELDMK LKELEIEKKQ  120
GEAIEKLRRE IQQKLIWEAP IEELGLRDLQ QLSLSLENLK KKIHARVHEL CNGASSSSSW  180
SLPSTDATHS VGAFVTETTN RDMEWQTQRQ NEELNSSLDC LTFDAF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892886.11e-142agamous-like MADS-box protein AGL61
TrEMBLA0A2N9GSH41e-86A0A2N9GSH4_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-39AGAMOUS-like 61