PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00033-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TCP
Protein Properties Length: 411aa    MW: 43365.8 Da    PI: 8.5138
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00033-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-3969189289
                                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 
                                                           ++k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+
  augustus_masked-scaffold00033-abinit-gene-0.7-mRNA-1  69 PPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPS 125
                                                           789****************************************************** PP

                                                   TCP  59 ikeltgtssssasec.eaesssssasnsssg.......................... 88 
                                                           ++++tgt++++a+++  + s +ss+s+ s++                          
  augustus_masked-scaffold00033-abinit-gene-0.7-mRNA-1 126 VIAATGTGTIPANFTsLNISLRSSGSTMSAPshfmrnnpsylfntssnfsmphhrni 182
                                                           ************999877777777775555555555555555554334444444433 PP

                                                   TCP  89 ......k 89 
                                                                  
  augustus_masked-scaffold00033-abinit-gene-0.7-mRNA-1 183 sssflfP 189
                                                           3333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-4074256IPR005333Transcription factor, TCP
PROSITE profilePS5136927.26575129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDDHENGLRR PNFPLQLLEK KEDLSSACSS SHYPNTITTI LTPTTSTTST SLQVQQAIEQ  60
SKLSNNKPPP KRASTKDRHT KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ  120
QAEPSVIAAT GTGTIPANFT SLNISLRSSG STMSAPSHFM RNNPSYLFNT SSNFSMPHHR  180
NISSSFLFPT TTSSDQTNSG SGNSNSNSSM FLNSNVNVNN VTLHSQAKQE TLLDVSDCEG  240
RVTKRRPVLD HQQEMSQNQM GGYLLQSSNS GSINPGTFWM LTNPNPSSTQ VMSGGHDPLW  300
TFPSSGGGSG GGGGGGANSG AGMYRGSIPM SSGLHFMNFA PPVALLPSQQ FGTGIGGGGG  360
GSGASADTHL GMLAALNAYR PIVGSGAMES PASGTHHHGG EDGRETTSHN S
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886583.10.0transcription factor TCP15
SwissprotQ93Z004e-60TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A2N9FF931e-158A0A2N9FF93_FAGSY; Uncharacterized protein
STRINGVIT_17s0000g06020.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.16e-49TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]