PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C027409P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 314aa    MW: 36694.3 Da    PI: 6.007
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C027409P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.68.6e-22161483128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvka.eekewyfFskrdkkyat.gk...rknra..tksgyWkatgkd 89 
                     +G++F+Ptd++l+ +yL  k++g++     +i ++d+y  +ePw++ +++k+ + +++yfF+k ++++++ g+   + +r+   ++g+W+   + 
  MELO3C027409P1  16 VGVKFRPTDQQLL-HYLYCKINGQPYFQ-GAIFDFDLYGgTEPWEIWQSFKGiDGEDLYFFTKLKRSTKNcGQlsaHISRKigLANGTWSGENSA 108
                     7************.***********655.78*****99638*****865555377899*****99998864443223333323459********* PP

             NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++++  +++ +g +k + +  +++ + ++ +W+mheyrl
  MELO3C027409P1 109 TPIFANedDEQIIGYRKRFRYE-NDQVEEHHGEWIMHEYRL 148
                     ****99777888********97.6777779*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-2512169IPR003441NAC domain
PROSITE profilePS5100524.78214170IPR003441NAC domain
PfamPF023657.5E-1616148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDSSSGYLPL PLNQYVGVKF RPTDQQLLHY LYCKINGQPY FQGAIFDFDL YGGTEPWEIW  60
QSFKGIDGED LYFFTKLKRS TKNCGQLSAH ISRKIGLANG TWSGENSATP IFANEDDEQI  120
IGYRKRFRYE NDQVEEHHGE WIMHEYRLHQ SYLAYQDVDH NYVLCRIRKN ERAKRKLEIR  180
ELQQPNKKRM TAPKISPNKR LKTKAKESCL VDQLQPIEPR LMIRETIYNS NIIPDKTTCE  240
DISVVDHVPN MIANQDNVYT PLMATNIESN NLGTGLNLGD LNDDEWMNCI NLDELNDVHF  300
PFYTEGNFDE IKHR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6833330.0LN683333.1 Cucumis melo genomic scaffold, unanchored_scaffold01527.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465646.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1S3CPA20.0A0A1S3CPA2_CUCME; NAC domain-containing protein 83-like
STRINGXP_008465646.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-14NAC domain containing protein 38