PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C027079P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 561aa    MW: 62116.2 Da    PI: 4.8771
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C027079P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.2e-351332242102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+++i+ed++l++++sw + g+sfvv+d+ ef+k +Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F++gkk+ll++
  MELO3C027079P1 133 FLWKTFDIVEDPALDSIVSWGSAGQSFVVWDPVEFSKVILPSNFKHNNFSSFVRQLNTYGFRKIDADK---------WEFANEDFQRGKKHLLKN 218
                     99***************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+ks
  MELO3C027079P1 219 IQRRKS 224
                     ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-54129222IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-37130222IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-33130222IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-16133156IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-30133222IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-16171183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340172196IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-16184196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MKPIEEGDSV NPIDVSSSSA QSEFDAAGFS SDPEFMLLPF SRPLMGSESF SPRGSFLEDT  60
AAGLSMVSIG FSSSPSTGGL FGENPMPSSA AHHMFDVMLE QDKGTLDPLA VPCMGSAVPQ  120
PLESLHSQFV PPFLWKTFDI VEDPALDSIV SWGSAGQSFV VWDPVEFSKV ILPSNFKHNN  180
FSSFVRQLNT YGFRKIDADK WEFANEDFQR GKKHLLKNIQ RRKSPHSQQI GSLIGPSTGG  240
GKSGLEDEIG RLKKERSMLM QEVVELQQQQ KGTAQHVNTV NRRLQSAEQR QKQMISFLAK  300
LLQHPEFLFR LQKKKEQKDI DSSRTKRRFV KQHKHEDGFT PSAEGQIVKY QPDWENLARS  360
SSTSDLNPSL LEGPFAYLLQ GVFGDLGSIP EGVPNFQFKN ASSSDVIASE ELAFHHGVVK  420
PTEELRVEAS NKSMDDQHFK GKAIESPPEE SNPDYFLSLA EDILQSSHHG TGGVIKPEEI  480
WDAYLNADVG PSGSSSKLWS NPECFEDPFL QISSKQPPIW DFGSQQAGDS SMDKWLASGF  540
PFDDPDNQAY PKNADDSDNK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2213022426131Heat shock factor protein 1
5d5v_B3e-2213022426131Heat shock factor protein 1
5d5v_D3e-2213022426131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6820800.0LN682080.1 Cucumis melo genomic scaffold, unanchored_scaffold00259.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465516.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A1S3CP180.0A0A1S3CP18_CUCME; heat stress transcription factor A-3
STRINGXP_008465516.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-83heat shock transcription factor A3