PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026932P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 380aa    MW: 41842.9 Da    PI: 4.7591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026932P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63.1e-29147208159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK + g+++pr+YYrCt++   gC+++k+v+rs++dp+++eitY+g+H ++
  MELO3C026932P1 147 LDDGFAWRKYGQKGILGAKHPRGYYRCTHRnlqGCQATKQVQRSDDDPTIFEITYRGKHSCS 208
                     59***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.227142206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-29144209IPR003657WRKY domain
SuperFamilySSF1182901.57E-25146209IPR003657WRKY domain
SMARTSM007741.6E-40147209IPR003657WRKY domain
PfamPF031065.2E-27148207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MENFGEWDQN KLKNELLKGM ELAKQLQIQL NVRSTPSSSM AASSSSSSSS SSSSSSSSND  60
GCELLVQKIL CSYEKALSLL NSYGAQINIY ESPSSFNGGS PRSEDSDREF KDPFDITNAN  120
SFRKRNILPT WTQKFQVSPG MAIEGSLDDG FAWRKYGQKG ILGAKHPRGY YRCTHRNLQG  180
CQATKQVQRS DDDPTIFEIT YRGKHSCSQV SNLSTPCTTT SEFQQQNQGV VVELPDQKKA  240
QNQQTSPDAL LDSWSSLRVI TQNLDTTHEP TLQFHPLCYD RVEFASTSTV DVNFTEFSSF  300
LSPTTSGSGL SYFSASSSGL SEGFVVGNQN LNNLQPNNCE IFSSPTSALN TQTTTALDFS  360
FGELQMEPTF SFDNTDFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21146207768OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818490.0LN681849.1 Cucumis melo genomic scaffold, anchoredscaffold00116.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465380.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1S3CNR60.0A0A1S3CNR6_CUCME; probable WRKY transcription factor 53
STRINGXP_008465380.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-48WRKY DNA-binding protein 30