PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026892P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 291aa    MW: 32159.4 Da    PI: 9.6434
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026892P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.78e-19208242135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C++  Tp+WR+gp g+ktLCnaCG++y+k g+
  MELO3C026892P1 208 CSHCQAQRTPQWRSGPLGPKTLCNACGVRYKKSGR 242
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.099202262IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-17202253IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-17204267No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15205243IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.94E-14207255No hitNo description
PfamPF003202.3E-16208242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDYQTETASV NYKCEQDDCS NLEAEFSSTV DDILYSSQAM TMDVDVSLEW LSAFVEECLS  60
TKGSTHPLPP PSQLSTQLNN PPTKPSSLSQ LVPTSSNSQF THFPAVPGKA RSKRRRRTPS  120
NKMSVLPLIS RRLRQLNLLQ NKHSLQLTSS TDPLLLQQTY WLADSELLLP PEARGGEREK  180
TVDMGQIKTT VEKSVKKQQQ GAGSGRRCSH CQAQRTPQWR SGPLGPKTLC NACGVRYKKS  240
GRLLPEYRPA NSPTFVSLLH SNSHKRVMEM RMMNASSSTS TPTPTCPSSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818390.0LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465326.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S3CNM00.0A0A1S3CNM0_CUCME; GATA transcription factor 12-like
STRINGXP_008465326.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-39GATA transcription factor 12