PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026878P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 560aa    MW: 63522.2 Da    PI: 7.1126
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026878P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10508556247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+  E++ l  av+++G+g+Wk+I +        Rt+ ++k++w++ 
   MELO3C026878P1 508 KKWSLLEEDTLRTAVQRFGKGNWKLILSSYRdifDERTEVDLKDKWRNM 556
                      58********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.827499559IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-10505558IPR009057Homeodomain-like
SMARTSM007177.0E-7506559IPR001005SANT/Myb domain
PfamPF002494.3E-9508556IPR001005SANT/Myb domain
CDDcd116601.03E-16508558No hitNo description
SuperFamilySSF466892.89E-13509558IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDGDICRWII EFILRTPMDH HLQKKVMAAV PLPDKDFRLT KTVLLESIES EIFEAVVTEK  60
LLESFEYIEQ LDKAEGLAIM ESMKAAYCAV AVECTVKFLL VEGIQKDGRY FDAVRRIWSG  120
RVANLERSGK SKLVSRELKA WKDEFELSLC DKNVRLKLVH MNTRYDALKL TRDYLTEAWA  180
VIGPSFIQLS ASLMDKRVVN EMQSTQLEKV KNKMATESEV VGGSDEIELP SQSENYARPE  240
RQGGGEVLSQ PETRNDLLNR HQDLSTSEGS KQPATVATTT ERVQELAAET AEGEELVEKE  300
VAVLHYPSPR RENVKTSAVP RCKSLAFHRR VRGGAKISQL EDLENENDNL FGRYTCLDTP  360
EVNRVREALK ASSLELQAAV SDPLPDALRV AESVANALAE KKKTCEHSSE GRTDAGSSNP  420
TINKYAVPLQ SVSANLKNLC NGRKIIFPRP SIMERNSTAC TYEWNDSIDD LPEGSNANRL  480
RLPSPKRKDI SPLKKYEETK VVRRRQCKKW SLLEEDTLRT AVQRFGKGNW KLILSSYRDI  540
FDERTEVDLK DKWRNMTRY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819200.0LN681920.1 Cucumis melo genomic scaffold, anchoredscaffold00113.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465306.10.0PREDICTED: uncharacterized protein LOC103502960 isoform X2
TrEMBLA0A1S3CNZ40.0A0A1S3CNZ4_CUCME; uncharacterized protein LOC103502960 isoform X2
STRINGXP_008465305.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-20MYB_related family protein