PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026778P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 250aa    MW: 28376.5 Da    PI: 10.1211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026778P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08105152254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +  h  +Er RR++ ++++  L ++lPk+     +K++K +i++ A + I+++
  MELO3C026778P1 105 CHRHMLNERMRREKQKQSYLALHSMLPKN-----TKNDKNSIVQSAARTIQEM 152
                     567899**********************9.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-10100169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-6101157No hitNo description
PROSITE profilePS5088811.255103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5105152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-7107171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-5109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDDTFPVEFW HNDHFWLDAP ISVPLSAPSS PPPATQISAF LPYLSAPPTG LLGQDNNNIA  60
TTTTTAATSY DSRNVNKRMI EYWTKHWHEK KELPVSAGDL EREKCHRHML NERMRREKQK  120
QSYLALHSML PKNTKNDKNS IVQSAARTIQ EMKGLEKTLK RRNSELEMEI AIAMKKKEKE  180
KRIINVALRN TSCGINSMLT VLNVLKTVGV NSKAIHATFF NSQFSAQLAI DTHVRMNTYP  240
SSQIHHPLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818430.0LN681843.1 Cucumis melo genomic scaffold, anchoredscaffold00105.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465193.11e-175PREDICTED: transcription factor bHLH92
TrEMBLA0A1S3CPU01e-174A0A1S3CPU0_CUCME; transcription factor bHLH92
STRINGXP_008465193.11e-175(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.15e-35bHLH family protein