PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026521P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 339aa    MW: 38027.8 Da    PI: 6.8674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026521P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.7e-51361651128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppG+rFhPtdeel+ +yL+ kv + + ++l  v i+evd++++ePw+Lp+++k +ekewyfFs r +ky+tg r+nrat +gyWkatgkd++++
  MELO3C026521P1  36 LPPGYRFHPTDEELIAFYLASKVFKPSnFDL-GVnIAEVDLNRCEPWELPEEAKMGEKEWYFFSLRVRKYPTGLRTNRATVAGYWKATGKDRQIH 129
                     79********************988874666.555***************99999**************************************** PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s+ +g + g+kktLvfykg ap+g kt+Wvmheyrl
  MELO3C026521P1 130 SScNGVKLGTKKTLVFYKGGAPRGIKTKWVMHEYRL 165
                     *989999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5833187IPR003441NAC domain
PROSITE profilePS5100555.69636187IPR003441NAC domain
PfamPF023651.7E-2537165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MFGIEEVIGE LNREDDHEEK SDNGKEFIIK KHHRLLPPGY RFHPTDEELI AFYLASKVFK  60
PSNFDLGVNI AEVDLNRCEP WELPEEAKMG EKEWYFFSLR VRKYPTGLRT NRATVAGYWK  120
ATGKDRQIHS SCNGVKLGTK KTLVFYKGGA PRGIKTKWVM HEYRLHSDLA SPNVCKDEWV  180
LCRIIHKSGE KIKPKSSSFQ ETIPSPISLP SLLLNATQSI NHNNIQFQPP PHNIQHHENG  240
LESFIINNPH FIFQPNLFSF GLHNPDTHLS TPPPPPPSIQ MTDTNYHPHF NPSLLLDGGC  300
DSQQASSFGV DSGGTLVDVA GYGGARGDQS DENWSGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-483618717165NO APICAL MERISTEM PROTEIN
1ut4_B7e-483618717165NO APICAL MERISTEM PROTEIN
1ut7_A7e-483618717165NO APICAL MERISTEM PROTEIN
1ut7_B7e-483618717165NO APICAL MERISTEM PROTEIN
4dul_A7e-483618717165NAC domain-containing protein 19
4dul_B7e-483618717165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818220.0LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464817.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X2
SwissprotQ9S8515e-78NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1S3CMG20.0A0A1S3CMG2_CUCME; protein CUP-SHAPED COTYLEDON 3 isoform X2
STRINGXP_008464816.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-80NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]