PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026503P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 299aa    MW: 32641.2 Da    PI: 7.408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026503P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-10181228455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  MELO3C026503P1 181 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 228
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-18175245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-10175232No hitNo description
PROSITE profilePS5088815.828177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-18177245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDPPTLINQP SFPTTPNANP NITPFNLSEI WHFPIHGGTS VEDSGPALAL RMAHLAHNLT  60
HFGDIAIGNP EVSPTDPVPL QLQQRLPHGH GVSKKRRDSE QDSPKVSSTS NGNNANANSS  120
AGNDSGGKRV KTAACRDDNH ESKTEAEPRS GKTEQNSQPT PEQPKQDYIH VRARRGQATD  180
SHSLAERARR EKISERMKIL QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA  240
VNSRIGPGIE VFPPKDYGQQ TFDSSGVAFG SQATREYSRG SSPEWLHMQI GGGFERTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818220.0LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464787.10.0PREDICTED: transcription factor bHLH79
SwissprotQ84T081e-77BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A1S3CNW10.0A0A1S3CNW1_CUCME; transcription factor bHLH79
STRINGXP_008464787.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-93BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]