PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026180P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27513.5 Da PI: 6.5747 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.8 | 1.5e-34 | 4 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatgkd 89 lppGfrF+Pt+eelv eyLk kv ++ l++ ++i+e+ ++ +++Pwd+p ++ ++++e y Fsk++ ++ +++++ ksgyWka g++ MELO3C026180P1 4 LPPGFRFEPTEEELVFEYLKCKVFSSALPA-SIIPEInGVWNLDPWDIP-AAGGGDEEKYLFSKKEAEEYNNNNNGEGgiigwSKSGYWKARGRE 96 79****************************.88999978**********.556789999****9998776654444425677788********** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ke++s+ + +l+g+k tL fy+++ +k +kt Wvmh+yrl MELO3C026180P1 97 KEIVSSenGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRL 137 *****8544556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-37 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.302 | 4 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-21 | 5 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRRLPPGFRF EPTEEELVFE YLKCKVFSSA LPASIIPEIN GVWNLDPWDI PAAGGGDEEK 60 YLFSKKEAEE YNNNNNGEGG IIGWSKSGYW KARGREKEIV SSENGVALMG MKSTLDFYTN 120 NIRKMKKTGW VMHQYRLIIP HSHSSTNKWV LCHILSPTNK LFDHIIHPHR HRRRLRYSIS 180 STKDENGDDQ DEHDEHVNHI TTSTAFSDDE HDSVSSTASS SSTSATFTDF TSTTTATTTF 240 HL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-25 | 4 | 154 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-25 | 4 | 154 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-25 | 4 | 154 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-25 | 4 | 154 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
3swm_B | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
3swm_C | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
3swm_D | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
3swp_A | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
3swp_B | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
3swp_C | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
3swp_D | 1e-25 | 4 | 154 | 20 | 165 | NAC domain-containing protein 19 |
4dul_A | 1e-25 | 4 | 154 | 17 | 162 | NAC domain-containing protein 19 |
4dul_B | 1e-25 | 4 | 154 | 17 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 0.0 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464389.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A1S3CLH3 | 0.0 | A0A1S3CLH3_CUCME; NAC domain-containing protein 83-like | ||||
STRING | XP_008464389.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24798 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-35 | NAC domain containing protein 83 |