PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026173P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 277aa    MW: 30342 Da    PI: 7.539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026173P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10126173455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  MELO3C026173P1 126 SHSLAERVRRQKISQRMKVLQTLVPGC----HKVTGKASMLDEIINYVQSLQ 173
                     8*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-12120177No hitNo description
SuperFamilySSF474593.66E-17120188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.942122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-17122188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-8126173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-11128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNSNACGWEL LEETAPNLQT PHNYDHHLLP PQIQSAPASS SNYQTPQHHH PLGPDHHIYM  60
PSSHSHPPSA EEEDQNGSKG GECKRRRCYN RAKAGERSGC KKKMTIKTQH DPADHVRARR  120
GQATDSHSLA ERVRRQKISQ RMKVLQTLVP GCHKVTGKAS MLDEIINYVQ SLQNQVEFLS  180
MKLASLHPVL YDFGMDFPEV LIVGTPASEI LNGNGMVSHS EQAELAHNNM APIYNTFQAT  240
GSGGGGSPIL TPGNSSFINP SPLFIDHGNT SLLHLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818141e-112LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132561e-112LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464382.10.0PREDICTED: transcription factor bHLH137-like
SwissprotQ93W884e-44BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A1S3CMW10.0A0A1S3CMW1_CUCME; transcription factor bHLH137-like
STRINGXP_008464382.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]