PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025905P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 532aa    MW: 59239.6 Da    PI: 9.223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025905P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07433482147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++ +E e lv+av+ lG+g+W+ +        k+Rt  ++k++w ++
   MELO3C025905P1 433 RRPFSVDEVEALVHAVETLGPGRWRDVKLQAFdsvKHRTYVDLKDKWKTL 482
                      6799**********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.57E-7234305IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.8E-4238305No hitNo description
CDDcd017690.00441243312No hitNo description
PROSITE profilePS5129415.087428487IPR017930Myb domain
SMARTSM007172.9E-6432485IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10433483IPR009057Homeodomain-like
SuperFamilySSF466892.57E-15434514IPR009057Homeodomain-like
CDDcd116601.51E-16434484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MKNVQGLAPD VIAENLEQQK TFEMEFPVNE VAFASHLKSC IPNLDGGCEI MVKDKPEKVM  60
SGVNIAMCRS SYPLVCDRNP HMWICSENGF EVPPCKDHGP QHPCPTSQEV VVIDDDNNFG  120
CIYPTTSRNS FRTAPCIKGH RIRKILASKN WKVAAKYGVK KNKSGGYKRT FNFNKRNSYK  180
NQRSQMNIPF KKRKLFDGCF SNCNDRRIVD KISDSNANAR ETSAHGKSSL VAGQQGDSRV  240
KLRIKSFRVP ELFIEIPESA TVSSLKRTVM EAMGTIIGRG IHVGVIFRGK KVKDDNKTLI  300
QTGISCDNQD GCLGFTLEPH SSQTHSSFCH KEPPSMVPCS STLKPIDGCN PNPTMDYLGN  360
NSTLLLETHA SKVNNSSESA CEPVPFPVDT AVEERSSDSK SLVTEQGMDV GTTNVVQICL  420
KSNQFEVGHR RMRRPFSVDE VEALVHAVET LGPGRWRDVK LQAFDSVKHR TYVDLKDKWK  480
TLVHTAKISP HQRRGEQVPQ QLLDRVLKAH AYWSLSSTPK NLPSPPPTKS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-43421514598Telomere binding protein TBP1
2qhb_A1e-43430514185Telomere binding protein TBP1
2qhb_B1e-43430514185Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464111.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_008464112.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_008464113.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A1S3CKQ70.0A0A1S3CKQ7_CUCME; telomere repeat-binding protein 5-like
STRINGXP_008464111.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2466833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-94TRF-like 2