PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025686P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 328aa MW: 36306.4 Da PI: 9.8613

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025686P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101	7.1e-32	258	316	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy WrKYGqK+vkg+++prsYY+Ct++gC v+k++er+++d ++v++tYeg+Hnh+ MELO3C025686P1 258 LDDGYWWRKYGQKVVKGNPNPRSYYKCTYPGCGVRKHIERASHDLRAVVTTYEGKHNHD 316 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-4	144	162	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.5E-34	243	318	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-28	250	318	IPR003657	WRKY domain
PROSITE profile	PS50811	35.703	253	318	IPR003657	WRKY domain
SMART	SM00774	8.9E-36	258	317	IPR003657	WRKY domain
Pfam	PF03106	6.1E-24	259	316	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEFFFFSATL GDPSGGGRRR QPDLAVVGKG NPPLSPPLYS PSSFFTIPPG ISPTQLLDSP 60 LLLNSSPILL SPSTRDLRKS TTNNSGHHQQ NIKQEHNITE FSFPRNHTTK SSSSSMFQSS 120 STVQTEAWGL ESESDRGEWE MRNRSGSEDG FNWRKYGQKV KKVIFLFFFS SSSSSSSSSS 180 SFEPVTMAAQ LKINSIASHS LTTPENSSIT IGDDHSDQAH PKRWKSESEK EIMTTGGGGK 240 TMREERIVVQ TISNVDKLDD GYWWRKYGQK VVKGNPNPRS YYKCTYPGCG VRKHIERASH 300 DLRAVVTTYE GKHNHDIPAA RGGKPIP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-37	249	319	8	78	Probable WRKY transcription factor 4
2lex_A	3e-37	249	319	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984030	1e-140	GU984030.1 Cucumis sativus WRKY protein (WRKY38) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463823.1	1e-169	PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 26, partial
Swissprot	Q6B6R4	2e-52	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A1S3CK37	1e-168	A0A1S3CK37_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 26
STRING	XP_008463823.1	1e-169	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1077	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	7e-47	WRKY DNA-binding protein 33

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]