PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025584P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 188aa MW: 21603.6 Da PI: 9.8094 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 22 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF+Ptdeel+++yLkkk+eg++ ++ evi+ev+iyk+ePwdLp k++ ++++ew+fFs+r kky++g++++rat+ gyWkatgk+++v+s MELO3C025584P3 22 MFPGFRFSPTDEELISFYLKKKLEGHEKSV-EVIAEVEIYKYEPWDLPaKSIIQSDNEWFFFSPRGKKYPNGNQTRRATDLGYWKATGKERNVKS 115 579************************999.99***************767778899************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+tLvf++grapkge+t+W+mhey+ MELO3C025584P3 116 -GSNTIGTKRTLVFHTGRAPKGERTEWIMHEYNT 148 .99*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-54 | 13 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.285 | 22 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-26 | 24 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0034976 | Biological Process | response to endoplasmic reticulum stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAAGAENRVS REVQLSMAVS SMFPGFRFSP TDEELISFYL KKKLEGHEKS VEVIAEVEIY 60 KYEPWDLPAK SIIQSDNEWF FFSPRGKKYP NGNQTRRATD LGYWKATGKE RNVKSGSNTI 120 GTKRTLVFHT GRAPKGERTE WIMHEYNTKD KAQVSSSCFK LKFAFVLCYW ISTWKNDDGS 180 WSKIVFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 11 | 146 | 4 | 138 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681929 | 0.0 | LN681929.1 Cucumis melo genomic scaffold, anchoredscaffold00080. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463642.1 | 1e-109 | PREDICTED: NAC domain-containing protein 89-like isoform X2 | ||||
Swissprot | Q94F58 | 2e-73 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | A0A1S3CJQ8 | 1e-108 | A0A1S3CJQ8_CUCME; NAC domain-containing protein 89-like isoform X2 | ||||
STRING | XP_008463641.1 | 1e-107 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 9e-76 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
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