PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025584P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 367aa    MW: 42005.3 Da    PI: 8.2722
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025584P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1622.2e-50221481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGfrF+Ptdeel+++yLkkk+eg++ ++ evi+ev+iyk+ePwdLp k++ ++++ew+fFs+r kky++g++++rat+ gyWkatgk+++v+s
  MELO3C025584P2  22 MFPGFRFSPTDEELISFYLKKKLEGHEKSV-EVIAEVEIYKYEPWDLPaKSIIQSDNEWFFFSPRGKKYPNGNQTRRATDLGYWKATGKERNVKS 115
                     579************************999.99***************767778899************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++g+k+tLvf++grapkge+t+W+mhey+ 
  MELO3C025584P2 116 -GSNTIGTKRTLVFHTGRAPKGERTEWIMHEYNT 148
                     .99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-5513163IPR003441NAC domain
PROSITE profilePS5100553.96722164IPR003441NAC domain
PfamPF023651.8E-2524147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAAGAENRVS REVQLSMAVS SMFPGFRFSP TDEELISFYL KKKLEGHEKS VEVIAEVEIY  60
KYEPWDLPAK SIIQSDNEWF FFSPRGKKYP NGNQTRRATD LGYWKATGKE RNVKSGSNTI  120
GTKRTLVFHT GRAPKGERTE WIMHEYNTKD KAQDFLVVCR LRRNNEFRQH SCSNRASSSQ  180
MNLSSLQAHS SEQVDSTESN QKDAAEITHV ESDDHDQKDF GSDDFYSDIL KDDIINLDTA  240
PFNGASDPLP LIFQRSDTER RSQHEENDVF EWLQNQGSAN RRIRLKKREA TGGKKLESMK  300
IGDCRNKVEK ARLCSTEVCE SRLMNPDSCG SILRGYYVRV VIFFLLILMA LFMSRWKVFG  360
MPKGLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-442116916170NO APICAL MERISTEM PROTEIN
1ut4_B8e-442116916170NO APICAL MERISTEM PROTEIN
1ut7_A8e-442116916170NO APICAL MERISTEM PROTEIN
1ut7_B8e-442116916170NO APICAL MERISTEM PROTEIN
3swm_A8e-442116919173NAC domain-containing protein 19
3swm_B8e-442116919173NAC domain-containing protein 19
3swm_C8e-442116919173NAC domain-containing protein 19
3swm_D8e-442116919173NAC domain-containing protein 19
3swp_A8e-442116919173NAC domain-containing protein 19
3swp_B8e-442116919173NAC domain-containing protein 19
3swp_C8e-442116919173NAC domain-containing protein 19
3swp_D8e-442116919173NAC domain-containing protein 19
4dul_A8e-442116916170NAC domain-containing protein 19
4dul_B8e-442116916170NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280288RRIRLKKRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819290.0LN681929.1 Cucumis melo genomic scaffold, anchoredscaffold00080.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463642.10.0PREDICTED: NAC domain-containing protein 89-like isoform X2
SwissprotQ94F581e-85NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A1S3CJQ80.0A0A1S3CJQ8_CUCME; NAC domain-containing protein 89-like isoform X2
STRINGXP_008463641.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.13e-88NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]