PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025091P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 470aa MW: 51993.5 Da PI: 6.4564 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 58 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW +eE+e++++a k++G + W+ I +++g ++t+ q++s+ qk+ MELO3C025091P2 58 RERWKEEEHEKFIEALKLYGRD-WRQIEEHVG-TKTAVQIRSHAQKF 102 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.07E-15 | 52 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.519 | 53 | 107 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.1E-16 | 56 | 105 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.1E-13 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-13 | 58 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-9 | 58 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-10 | 60 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MGAVNMELQN TGGGLCSDSI SSAGYEPTVS PDQHSSPNVQ LKEFCPKVRK PYTITKQRER 60 WKEEEHEKFI EALKLYGRDW RQIEEHVGTK TAVQIRSHAQ KFFSKVTRNS NGCSTTSVGC 120 IEIPPPRPKR KPAHPYPRKE VPQSRKASPI SEQTRSLSPQ LSEKECPSPT SIVVAGNGSD 180 TLMFTDSRIH HDSGSPDSSI PSTEPNSSSL DNESLTAALG TENSIPHDNI PTNLELFTKD 240 DVIEKDDSTK EVSIQSLKLF GRTVLITDPH KQSPILENSM PEADRKPGDN QKQVSPWNSI 300 VMDSSTGNTD CTWNHGAFYF IQLNNGDSKQ GPGSAVPVSW WSSYGSYPFS FVHCFKQADS 360 NANQVDDKET HKDQSWCGSN TGSVNSGENG DKASENDIQS CRLFHNNRDG DSVSKEELIG 420 KALSFELISS HEKNTKGFVP YKRCMAEGAT KSHTITEAER EEKRIRLCL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681894 | 0.0 | LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463161.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X1 | ||||
TrEMBL | A0A1S3CIJ4 | 0.0 | A0A1S3CIJ4_CUCME; protein REVEILLE 1-like isoform X1 | ||||
STRING | XP_008463161.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 5e-49 | MYB_related family protein |