PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C024787P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 294aa MW: 31674.7 Da PI: 10.0968

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C024787P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.1e-32	222	279	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYeg+Hnh+ MELO3C024787P2 222 DDYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERASDDPSMLIVTYEGDHNHS 279 99**********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.6E-18	172	218	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.0E-34	208	280	IPR003657	WRKY domain
PROSITE profile	PS50811	31.135	215	281	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	216	280	IPR003657	WRKY domain
SMART	SM00774	2.4E-38	220	280	IPR003657	WRKY domain
Pfam	PF03106	1.6E-27	222	278	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAVELLTGFT NPPQLSSRSP MDQDSAVQEA ASGLDTLKKL ITLLSHSPPS NLDSDCQAVA 60 NAAVSHFRKA ISLLGRSSRT GHARFRRAPL DSSKIYNATP IQQIPPPSLD RLDSATTINF 120 SYSAAPTSSF LTSLPASDSE IKLQHQPSSS SFQITDLSRV SSVVSKPSSG LKRKCGSENL 180 GSGKCAGSSG GRCHCSKKRK LRLKRVVRVP AISSKNADIP PDDYSWRKYG QKPIKGSPYP 240 RGYYKCSSLR GCPARKHVER ASDDPSMLIV TYEGDHNHSQ SVAEASSLIL ESW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-22	218	278	12	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984015	0.0	GU984015.1 Cucumis sativus WRKY protein (WRKY14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008462839.1	0.0	PREDICTED: probable WRKY transcription factor 15 isoform X2
Swissprot	O22176	3e-82	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A1S3CHS8	0.0	A0A1S3CHS8_CUCME; probable WRKY transcription factor 15 isoform X2
STRING	XP_004156764.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	2e-73	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]