PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C024787P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 295aa MW: 31761.8 Da PI: 10.0968 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.1e-32 | 223 | 280 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYeg+Hnh+ MELO3C024787P1 223 DDYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERASDDPSMLIVTYEGDHNHS 280 99************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.2E-17 | 172 | 219 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.0E-34 | 209 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.135 | 216 | 282 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 217 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-38 | 221 | 281 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-27 | 223 | 279 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MAVELLTGFT NPPQLSSRSP MDQDSAVQEA ASGLDTLKKL ITLLSHSPPS NLDSDCQAVA 60 NAAVSHFRKA ISLLGRSSRT GHARFRRAPL DSSKIYNATP IQQIPPPSLD RLDSATTINF 120 SYSAAPTSSF LTSLPASDSE IKLQHQPSSS SFQITDLSRV SSVVSKPSSG LKRKCGSENL 180 GSGKCAGSSG GRCHCSKKSR KLRLKRVVRV PAISSKNADI PPDDYSWRKY GQKPIKGSPY 240 PRGYYKCSSL RGCPARKHVE RASDDPSMLI VTYEGDHNHS QSVAEASSLI LESW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 219 | 279 | 12 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU984015 | 0.0 | GU984015.1 Cucumis sativus WRKY protein (WRKY14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462838.1 | 0.0 | PREDICTED: probable WRKY transcription factor 15 isoform X1 | ||||
Swissprot | O22176 | 1e-80 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A1S3CHV3 | 0.0 | A0A1S3CHV3_CUCME; probable WRKY transcription factor 15 isoform X1 | ||||
STRING | XP_008462838.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23320.1 | 5e-71 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|