PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024561P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 248aa    MW: 28241.5 Da    PI: 9.6873
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024561P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.16.9e-27229752127
             NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     + +e++w++F++r++++a+g r++r t++gyWkatg+  +v++++++ +g+k+t+vfykgrap+g+kt+W m+ey+
  MELO3C024561P1  22 QRDEEQWFYFIPRQESEARGGRPKRLTSNGYWKATGSPSHVYCSNNKSIGVKRTMVFYKGRAPNGTKTEWKMNEYK 97 
                     45778**********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.0671143IPR003441NAC domain
SuperFamilySSF1019413.14E-2621143IPR003441NAC domain
PfamPF023653.3E-112397IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTNPKGNEWF RLIAEYAGEV CQRDEEQWFY FIPRQESEAR GGRPKRLTSN GYWKATGSPS  60
HVYCSNNKSI GVKRTMVFYK GRAPNGTKTE WKMNEYKAIV HHRFINDSQP EHHSASDPNP  120
SSFDTTPTIR LRQEFSLCRI YKKSKTFRSF DRRPRPHEPR TMVQFALSTQ AATTEPSSFT  180
NEPNPVTSTA PLTATISSPG SSSSGDRVGK SSRTTAETSN VNNEVKLVVP MEAAYEPMWD  240
WEQLNWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-182514373168NAC domain-containing protein 19
3swm_B2e-182514373168NAC domain-containing protein 19
3swm_C2e-182514373168NAC domain-containing protein 19
3swm_D2e-182514373168NAC domain-containing protein 19
3swp_A2e-182514373168NAC domain-containing protein 19
3swp_B2e-182514373168NAC domain-containing protein 19
3swp_C2e-182514373168NAC domain-containing protein 19
3swp_D2e-182514373168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818760.0LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462671.11e-174PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A1S3CHI81e-172A0A1S3CHI8_CUCME; NAC domain-containing protein 90-like
STRINGXP_008462671.11e-173(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-50NAC domain containing protein 90