PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C024448P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 339aa MW: 37031.2 Da PI: 6.6896 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.2 | 2e-17 | 228 | 262 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ kTp+WR gp g+ktLCnaCG++y++ +l MELO3C024448P1 228 CLHCQAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 262 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.1E-79 | 15 | 314 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.4 | 222 | 258 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.7E-17 | 222 | 272 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 223 | 259 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.23E-15 | 223 | 286 | No hit | No description |
CDD | cd00202 | 1.22E-12 | 227 | 278 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 228 | 253 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-15 | 228 | 262 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEVNKFLIGG YFDGGVGEFS QEMTKAAEHF TIDDLLDFSN EDTIMTDGCF DNVAGSSTDS 60 STITAVDSCN SSVSGGDHHH FHGNIGSRSF DESQFSGDLC VPCDDLAELE WLSNFVEDSF 120 STEGKDLQVL NYLSNSHSIS KPQTPETSSS SALPPSVSIP SDSSNNSPRF PAETPLPCKA 180 RSKRSRTAPC DWTTRLLHLL SPADPKPPKS SSSKKKDAPN GDSSGRKCLH CQAEKTPQWR 240 TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFISAKHS NSHRKVLELR RQKELQIAQQ 300 QQFVNQSAIF GVTNGCDEYL ISHHTGPSVR HMIWRMLV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 0.0 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462442.1 | 0.0 | PREDICTED: GATA transcription factor 9-like | ||||
TrEMBL | A0A1S3CIH2 | 0.0 | A0A1S3CIH2_CUCME; GATA transcription factor | ||||
STRING | XP_008462442.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-72 | GATA transcription factor 9 |