PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024287P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 304aa    MW: 33882.6 Da    PI: 6.8848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024287P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.8e-17231267135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg+
  MELO3C024287P1 231 CRHCGISEksTPMMRRGPDGPRTLCNACGLMWANKGT 267
                     *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.09578113IPR010399Tify domain
SMARTSM009793.6E-1178113IPR010399Tify domain
PfamPF062003.7E-1384112IPR010399Tify domain
PROSITE profilePS5101713.205155197IPR010402CCT domain
PfamPF062036.4E-16155197IPR010402CCT domain
PROSITE profilePS501149.249225286IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-11225278IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-13226289No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15230272IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.4E-15231267IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231258IPR000679Zinc finger, GATA-type
CDDcd002025.06E-15231286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDSIHPSDGR MHISHAPHSM HTQSVQEQEH HDLHYMSNGN GLADEHENEG HGIMVVEREV  60
QSDHGDLAEN RGVMVDRGGE NCDQLTLSYQ GQVYVFDSVS PEKVQAVLLL LGGREVPLRV  120
PSIPITNQPN DRHLTDEAFN QALANIPPRL SVPQRLASLI RFREKRKERN FDKKIRYTVR  180
KEVALRMQRN KGQFTSSKPS HEDSSLAMAS WESNESWSSD GNGSQQQEIL CRHCGISEKS  240
TPMMRRGPDG PRTLCNACGL MWANKGTLRD LSKTPNQGGQ TATFNRNENA VQNGDSESNP  300
KGV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG0038740.0HG003874.1 Cucumis sativus mRNA for GATA transcription factor 24-like, cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462209.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-117GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3CGY40.0A0A1S3CGY4_CUCME; GATA transcription factor 24-like isoform X1
STRINGXP_008462209.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-119ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]