PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024138P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 441aa    MW: 48951.4 Da    PI: 10.1135
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024138P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-187713399
                    -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+v+v+r+
  MELO3C024138P1  7 TQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELRVGVRRQ 71
                    458999*********************************************..3489999****996 PP
2Auxin_resp101.98.4e-3496175183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr+  s+F+++++k+++++k+ + vGmRfkm+fe+e+s+err++Gt+vgv d++p +W++SkWrsLk
  MELO3C024138P1  96 ASHAVRTQTYFVVYYKPRT--SQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSP-QWSDSKWRSLK 175
                     689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.788172IPR003340B3 DNA binding domain
SMARTSM010190.0011172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-25285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-23299IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-16771IPR003340B3 DNA binding domain
CDDcd100171.58E-13870No hitNo description
PfamPF065072.2E-3196175IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSQSTPTQEL AAKDLHGYEW KFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD  60
NGELRVGVRR QARQQSLMPS SVISSHSMHL GVLATASHAV RTQTYFVVYY KPRTSQFIIS  120
LNKYLETVKN GYEVGMRFKM RFEGEESPER RFTGTIVGVG DMSPQWSDSK WRSLKIQWDE  180
PATIQRPERV SPWEIEPFVP SASLNFTHPA IKSKRARPVE IPPPEITSGS APSGFWLQGS  240
TIPHEISQIS GGTNEVQSSN NRVVWALGQR KLDSNSSHCN PIANVEGIWP SPPLNISLNL  300
YPDSTFEREL VQKQPQSSPY SSSVTSKPSS DLIHPDQLEK GSKPDISLGC RIFGIDLKKN  360
SSIVPTNSSI VPTLERRSSC LLMVSDGAPE PVTMAVVTPQ VDAGNLSQHS KEQQLSSELS  420
TKGTQTKHIS NLSSRTRTKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-981198155355Auxin response factor 1
4ldw_A2e-981198155355Auxin response factor 1
4ldw_B2e-981198155355Auxin response factor 1
4ldx_A2e-981198155355Auxin response factor 1
4ldx_B2e-981198155355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902809.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9C5W91e-117ARFR_ARATH; Auxin response factor 18
TrEMBLA0A1S4E3K70.0A0A1S4E3K7_CUCME; Auxin response factor
STRINGXP_008462117.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.21e-119auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]