PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024135P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 297aa    MW: 32822.9 Da    PI: 6.0309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024135P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.4e-27102161359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK++ gs+fpr+Y+rC+++   gC ++k+v++s++dp++ ++tY+g+H+++
  MELO3C024135P1 102 DGFSWRKYGQKDILGSQFPRGYFRCSHRftqGCLATKQVQKSDNDPTIYDVTYRGRHTCN 161
                     9**************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-2794162IPR003657WRKY domain
SMARTSM007741.3E-37100162IPR003657WRKY domain
SuperFamilySSF1182901.2E-23100161IPR003657WRKY domain
PROSITE profilePS5081121.459102163IPR003657WRKY domain
PfamPF031063.8E-25102160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFLSLIQEL NQGKQLANQL RNHLHPSSSS HGILLVDKIL RSYENALLAL SAGGGASVNS  60
AIAPVNAAVK DGDVSKKRKL MAKWSEQVKV SSGSAVEGPC CDGFSWRKYG QKDILGSQFP  120
RGYFRCSHRF TQGCLATKQV QKSDNDPTIY DVTYRGRHTC NKALHSTNTP QEHQNSLLQH  180
PIPPKQEEKP LQQLHDPLCF MFSSDPIRVK SENLDNANGG LLQPFCPPSP MFGSEVQDDQ  240
SPFRESECSL TFESNDTFGL CCDFETGFVS IPSSMTNISI GDLEEYCSFD NLEMFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-211021581874Disease resistance protein RRS1
5w3x_D5e-211021581874Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840350.0GU984035.1 Cucumis sativus WRKY protein (WRKY50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461982.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1S3CGE20.0A0A1S3CGE2_CUCME; probable WRKY transcription factor 53
STRINGXP_008461982.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2471333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-43WRKY family protein