PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023403P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 275aa    MW: 31075.9 Da    PI: 9.2264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023403P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.6e-09105126425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     + Cr f+r   C yGd+C+F H
  MELO3C023403P1 105 KVCRLFQRRKKCAYGDQCRFLH 126
                     68******************** PP
2zf-CCCH31.33.5e-10176201227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k ++C  ++ tG C+yG+ C+FaHg+
  MELO3C023403P1 176 KPRPCYPWQTTGRCPYGAGCRFAHGE 201
                     789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.962101129IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-7103130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-7105130IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7105126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8172205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267174202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13176206IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4176201IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7176201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSAPNRFVPE ARGNWPLLPP PYPDPRNQSF YRSTMSGAVS SWRMPSNFGI PPWNNWNIGY  60
EHELGRSYRP GFNDTHRMLP SRPGIEFHEG QLSERWNVDD SNEMKVCRLF QRRKKCAYGD  120
QCRFLHEIPE KTRDSGSSSQ NYEVRRSGFD QLEEVRSKVQ TKVVVRGEIP KPLIGKPRPC  180
YPWQTTGRCP YGAGCRFAHG EAELQKLEPC SASQRGSVGG VSATATTTAP VEAGLRSSKE  240
IGTDCKNKGP RINQFFESKE SKKLIGIYAD WLED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461087.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_008461088.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016902639.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016902640.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A1S4E3290.0A0A1S4E329_CUCME; zinc finger CCCH domain-containing protein 39-like
STRINGXP_008461087.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2472233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-16C3H family protein