PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023230P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 25611.1 Da PI: 4.421 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.8 | 3.4e-26 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppG+rF Ptde+lv ++L +k+++++ ++ + +i++++++ ++Pw+++ k+++++++ yfFs+ + +rat+sgyWk d++++ MELO3C023230P1 15 LPPGLRFCPTDEDLVLHFLYHKANSHHhFSNSIIIPHLQLHLYNPWQFHgKTLSNGDNIHYFFSRVGE--------SRATESGYWKDVLMDEPIF 101 79********************999984555556**************95566666666688877644........699**************** PP NAM 94 sk.kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 ++ +g +vg+kk +f+ + ++p++ +t+W+m+ey++ MELO3C023230P1 102 CSaNGDEVGIKKYHIFFagdqeeDDESPSPIQTSWIMQEYHI 143 9878999**********66665445677788*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-31 | 13 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.478 | 15 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-17 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDEGGISGNN SLNLLPPGLR FCPTDEDLVL HFLYHKANSH HHFSNSIIIP HLQLHLYNPW 60 QFHGKTLSNG DNIHYFFSRV GESRATESGY WKDVLMDEPI FCSANGDEVG IKKYHIFFAG 120 DQEEDDESPS PIQTSWIMQE YHIYNYLLNN THHAHPSQNN NNNLSQTKSE FGLWVVCRVF 180 EAKENNNIIG RSMFCYEEDD DDDNESELSY LDEMYLSLDD I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-20 | 15 | 185 | 20 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681912 | 1e-178 | LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059. | |||
GenBank | LN713265 | 1e-178 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460884.1 | 1e-165 | PREDICTED: NAC domain-containing protein 104-like isoform X1 | ||||
TrEMBL | A0A1S3CDX4 | 1e-164 | A0A1S3CDX4_CUCME; NAC domain-containing protein 104-like isoform X1 | ||||
STRING | XP_008460884.1 | 1e-164 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31510 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 7e-32 | xylem NAC domain 1 |