PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023076P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 289aa    MW: 31113.7 Da    PI: 6.7458
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023076P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18211245135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  MELO3C023076P1 211 CLHCGAEKTPQWRAGPFGPKTLCNACGVRFKSGRL 245
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-681283IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.793205241IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-16205255IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-14207269No hitNo description
Gene3DG3DSA:3.30.50.103.9E-14209243IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.28E-13210258No hitNo description
PfamPF003205.1E-16211245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440211236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESSLAFMDD LLDFSSDIGE EDEEDDAVPP FSVKSKSSST TAPDSSDLNA AAMHPDDSSS  60
CRVLPEEDYA EEELEWLSNE DAFPAVETFV DILSDHHHHH APQPPPLTSV SKQNSPVSVL  120
ESTSISSHGE TINGGNKTSV HGSSILMSCC GGLKVPGKAR SKRRRGRHIS GHHLWFKQQP  180
SSKNLKQVVP TTETAAAVAA TTGAAGIGRK CLHCGAEKTP QWRAGPFGPK TLCNACGVRF  240
KSGRLVPEYR PASSPTFSAD LHSNSHRKVM EMRRQKQLGM VVNPMDKG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460721.10.0PREDICTED: GATA transcription factor 1
SwissprotQ8LAU92e-61GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1S3CCM60.0A0A1S3CCM6_CUCME; GATA transcription factor
STRINGXP_008460721.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-53GATA transcription factor 1