PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022342P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29307 Da PI: 9.5127 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.2 | 1.1e-51 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+ev+++k++PwdLp + e+e yfFs+r+ ky++g+r+nrat+sgyWkatg dk+++++ MELO3C022342P1 14 LPPGFRFHPTDEELVVQYLKRKVLSCPLPA-SIIPEVEVCKADPWDLPGN---MEQERYFFSTREAKYPNGNRSNRATTSGYWKATGIDKQIVTS 104 79****************************.89***************54...46799*********************************9988 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vglkktLvfy+g+ p+g++tdW+mheyrl MELO3C022342P1 105 kGNQVVGLKKTLVFYRGKPPHGSRTDWIMHEYRL 138 57778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-59 | 9 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.118 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-27 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVLSCP LPASIIPEVE VCKADPWDLP 60 GNMEQERYFF STREAKYPNG NRSNRATTSG YWKATGIDKQ IVTSKGNQVV GLKKTLVFYR 120 GKPPHGSRTD WIMHEYRLAS PPTVCFNASQ EKSSFQSCVG PMENWVLCRI FLKKRNGQQN 180 EEERNTSSNS NSNKKTRMGK PVFYDFMRKE RAETDLNLAP SSSSSGSSGI TEISNNELDD 240 HEESSSCNSF PYFRRKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 12 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 12 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 12 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 12 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 12 | 179 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 12 | 179 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 12 | 179 | 15 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 1e-172 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 1e-172 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459893.1 | 0.0 | PREDICTED: NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-111 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A1S3CBB6 | 0.0 | A0A1S3CBB6_CUCME; NAC domain-containing protein 83 | ||||
STRING | XP_008459893.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-108 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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