PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022250P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 434aa    MW: 48684.9 Da    PI: 5.7602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022250P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13251297354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI+ L
  MELO3C022250P1 251 MNHVEAERQRREKLNNRFYALRSVVPNV-----SRMDKASLLSDAVSYINAL 297
                     689************************6.....4***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.5E-3818166IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.23E-18240310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10251297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.70E-15251302No hitNo description
Gene3DG3DSA:4.10.280.103.2E-17252313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-16254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEELLLSPSS SSSSSSSLHH RLRFLLHSQP LPWSYAIFWQ TTTDDNGSVF LSWRDGHFQF  60
PSQHPLSPPL LPDDPTDLDW FYMMSLTSSF PAADALPGKS FTSSSVVWLT GSEELHLHDC  120
HRVKEAKSHG IQTFLCVPTS YGVLELASQQ IIPEDWGLIQ QIKSLFDPGF VNFSNTTDTP  180
LPFLDQDFNF EDIGFISEVA EEEMETPLRK KSKTGEWELS DSDSPVMKTG VMKKTGQKRG  240
RKPNMSKENA MNHVEAERQR REKLNNRFYA LRSVVPNVSR MDKASLLSDA VSYINALKAK  300
LEEMELQLRE SKKSRDDGGD NQSTTTTSEE LMKGKNGGGV RTTTTTTTTT TLVTRFDVEV  360
KIIGRDAMVR VQSQNLNFPS AIVMGVFRDM EFEIQHASIT NVNDIMLQDV LIKLPHGFST  420
DEALKAAVLS RLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-25171678193Transcription factor MYC3
4rqw_B1e-25171678193Transcription factor MYC3
4rs9_A1e-25171678193Transcription factor MYC3
4yz6_A1e-25171678193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902487.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S4E2N50.0A0A1S4E2N5_CUCME; transcription factor MYC2-like
STRINGXP_004166899.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-59bHLH family protein