PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022213P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32743.9 Da PI: 8.6554 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl MELO3C022213P1 14 KGAWTKDEDQRLIDYIRLHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 7.7e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ MELO3C022213P1 67 RGNFTEDEDELIIRLHSLLGNK-WSVIAGKLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.791 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.576 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.13E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKD EDQRLIDYIR LHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEDEDELIIR LHSLLGNKWS VIAGKLPGRT DNEIKNYWNT HIKRKLITRG 120 IDPQTHRPLN EPPTAGTALS PRLPYQSHHH HRRHHQHLTP NHSSSSSSSL PNIAELPIVK 180 PANNVHSSDA DEEGSGTTTE MDPPVAAAET MLGVHVKTEV NLELSIGLQP FQGEGVRGGS 240 VLGSSAESRL REERRALVMC LCWQLGWEKG GESCRNCERT YGWFRGSALG SSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 118 | 7 | 110 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 0.0 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459665.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 3e-91 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A1S3CB73 | 0.0 | A0A1S3CB73_CUCME; transcription repressor MYB6-like | ||||
STRING | XP_008459665.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-91 | myb domain protein 6 |