PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022119P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 162aa    MW: 17718.1 Da    PI: 10.4447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022119P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-171867255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr ++ +gr+v+eIr p   gk++r++lg+f ++e+Aa+a++ a+  l+g
  MELO3C022119P1 18 PFRGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFASPEMAARAYDSAAAFLRG 67
                    69****888.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-331881IPR001471AP2/ERF domain
PROSITE profilePS5103220.8111875IPR001471AP2/ERF domain
PfamPF008472.0E-101967IPR001471AP2/ERF domain
PRINTSPR003673.1E-111930IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-201977IPR016177DNA-binding domain
CDDcd000183.21E-181977No hitNo description
Gene3DG3DSA:3.30.730.107.5E-291977IPR001471AP2/ERF domain
PRINTSPR003673.1E-115777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MTQAQQQHLR ANGSITKPFR GVRKRSWGRY VSEIRLPGKK TRVWLGSFAS PEMAARAYDS  60
AAAFLRGNSA VLNFPDSVSS LPQPESCSRE HIQLAAAKAA AQVRTETVEG GDQQRTRSGW  120
SSTMFEQVKE VPLLSPLRLG LLGFGPALNE EDPSLLLPTY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161075672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459710.11e-115PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ391272e-29TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A1S3CAB81e-114A0A1S3CAB8_CUCME; ethylene-responsive transcription factor ERF022-like
STRINGXP_008459710.11e-115(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]