PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021212P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 646aa    MW: 72961.9 Da    PI: 5.8336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021212P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-064594921755
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     N++f  L+++lP++        +K++iL  +++Y+k+L+
  MELO3C021212P2 459 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 492
                     99***********8.....58***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-528189IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.829442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-5451497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-6457496No hitNo description
SuperFamilySSF474591.31E-9459513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-9459505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MACEPGFLRK QLAVAVKSIQ WSYAIFWSPS TRQHGVLEWC DGYYNGDIKT RKTVQAEDVH  60
VDNMGLHRSE QLRELYRSLL EGESEQRTKK PPASLSPEDL SDAEWYYLVC MSFFFNQGQG  120
LPGRALADDR TIWLCNAQYA ESSVFSRSLL AKSASIQTVV CFPYLGGVIE LGVTEQVAED  180
PCLLQHVKDF LLKFSKPICS KKPSSAAYKD DNGKEPMTAK SDNEIVEFLA MENLYCSTAV  240
KFDGKSVNGI QRKKINEFGI DSLDDFSNGC EQYHQMEDSL RLEGVEGGAS RFQSLQFLDD  300
DFSYGFQDSM NPSDCISEAL ANQDKVSSSP RLKDANNLPL KELQNPNQTQ SGSLDPSSDE  360
DMHYKRTIFT ILGSSTQLVG SPLLHNFSNR SNFTPWKKVM AETHTPPMQQ RMLKKILFAV  420
PLLSAGSLKG LKDVERSILK QGNNNSCTKN ATLDKLRENE KFMALKSMLP SLNEINKVSI  480
LNDTIKYLKM LEARVQELET CMDSLYYEER FRRKYLDMVE QTSDNYDYEK IEGSLKPSTN  540
KRKACEMDET DLKLKHDFPK VGHKLDVKVS MEEHEVLIDM HCPYREYILV DVVDALNDLQ  600
LDAYSVQSSD HNGFFSLTLK SKFRGIAAAS VGMIKLALLK VANKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-16818748227Transcription factor MYC3
4ywc_A5e-16818748227Transcription factor MYC3
4ywc_B5e-16818748227Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1904880.0JN190488.1 Cucumis sativus GL3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458230.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor EGL1-like
TrEMBLA0A1S3C7Z70.0A0A1S3C7Z7_CUCME; LOW QUALITY PROTEIN: transcription factor EGL1-like
STRINGXP_008458230.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-148bHLH family protein