PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021212P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 658aa    MW: 74354.5 Da    PI: 5.8134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021212P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-064715041755
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     N++f  L+++lP++        +K++iL  +++Y+k+L+
  MELO3C021212P1 471 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 504
                     99***********8.....58***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-518201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.829454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-5463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-6469508No hitNo description
SuperFamilySSF474591.31E-9471525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-9471517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MACEPGFLRK QLAVAVKSIQ WSYAIFWSPS TRQHGSIHQM GVENPIWVLE WCDGYYNGDI  60
KTRKTVQAED VHVDNMGLHR SEQLRELYRS LLEGESEQRT KKPPASLSPE DLSDAEWYYL  120
VCMSFFFNQG QGLPGRALAD DRTIWLCNAQ YAESSVFSRS LLAKSASIQT VVCFPYLGGV  180
IELGVTEQVA EDPCLLQHVK DFLLKFSKPI CSKKPSSAAY KDDNGKEPMT AKSDNEIVEF  240
LAMENLYCST AVKFDGKSVN GIQRKKINEF GIDSLDDFSN GCEQYHQMED SLRLEGVEGG  300
ASRFQSLQFL DDDFSYGFQD SMNPSDCISE ALANQDKVSS SPRLKDANNL PLKELQNPNQ  360
TQSGSLDPSS DEDMHYKRTI FTILGSSTQL VGSPLLHNFS NRSNFTPWKK VMAETHTPPM  420
QQRMLKKILF AVPLLSAGSL KGLKDVERSI LKQGNNNSCT KNATLDKLRE NEKFMALKSM  480
LPSLNEINKV SILNDTIKYL KMLEARVQEL ETCMDSLYYE ERFRRKYLDM VEQTSDNYDY  540
EKIEGSLKPS TNKRKACEMD ETDLKLKHDF PKVGHKLDVK VSMEEHEVLI DMHCPYREYI  600
LVDVVDALND LQLDAYSVQS SDHNGFFSLT LKSKFRGIAA ASVGMIKLAL LKVANKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-15819948227Transcription factor MYC3
4ywc_A1e-15819948227Transcription factor MYC3
4ywc_B1e-15819948227Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1904880.0JN190488.1 Cucumis sativus GL3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458230.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor EGL1-like
TrEMBLA0A1S3C7Z70.0A0A1S3C7Z7_CUCME; LOW QUALITY PROTEIN: transcription factor EGL1-like
STRINGXP_008458230.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-145bHLH family protein