PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C021101P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 346aa MW: 38090.1 Da PI: 7.9745

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C021101P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.3	2.1e-06	303	329	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + MELO3C021101P1 303 SHSLAERVRREKISERMKLLQDLVPGC 329 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-8	297	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.03E-4	297	331	No hit	No description
PROSITE profile	PS50888	11.052	299	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-7	302	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDNQFFLNPT GISQSLMHFD SNPSIATWHQ QFSSAMDVPT QLPDLTHCSS SSHQSPPDCF 60 LNPVPDQSFQ FDSALSSMVS SPAASNSNIT NESFAIRELI GKLGGNSERR ILELNNSTAA 120 AALTPSSSSV AEFSSDPGFA ERAARFSCFG SRSFNGRQLT NEFGNYRSHL SIGNEKLSRV 180 SSSPSLKALG SEMKLQEHKN NSSSQEDESS LSNQDKTITN PRKRKAITKA KLKESVVEAT 240 PEKESPKKLK TVETKENVKT EEDLKKNDEN SAEEKQAKAN SKPPEAPKDY IHVRARRGQA 300 TDSHSLAERV RREKISERMK LLQDLVPGCN KVGQEHTHTH THTNC*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDNQFFLNPT GISQSLMHFD SNPSIATWHQ QFSSAMDVPT QLPDLTHCSS SSHQSPPDCF  60
LNPVPDQSFQ FDSALSSMVS SPAASNSNIT NESFAIRELI GKLGGNSERR ILELNNSTAA  120
AALTPSSSSV AEFSSDPGFA ERAARFSCFG SRSFNGRQLT NEFGNYRSHL SIGNEKLSRV  180
SSSPSLKALG SEMKLQEHKN NSSSQEDESS LSNQDKTITN PRKRKAITKA KLKESVVEAT  240
PEKESPKKLK TVETKENVKT EEDLKKNDEN SAEEKQAKAN SKPPEAPKDY IHVRARRGQA  300
TDSHSLAERV RREKISERMK LLQDLVPGCN KVGQEHTHTH THTNC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681802	0.0	LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008458072.2	0.0	PREDICTED: transcription factor bHLH78
TrEMBL	A0A1S3C6Z0	0.0	A0A1S3C6Z0_CUCME; transcription factor bHLH78
STRING	XP_008458072.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	1e-47	bHLH family protein