PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C020923P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 207aa MW: 23840.4 Da PI: 9.9566 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.3 | 7.9e-15 | 24 | 122 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgr.sefel 92 ffkv ++ +lk++ l +p+kf++e+g k + ++ l+ +gr+W+v+l+ ++ + r+++ +GW+ Fv+ + f+vFk++++ s+f MELO3C020923P1 24 FFKVV-SARALKEQKLEIPRKFVREYGVKAFATNQICLKVaADGRKWNVRLTKTNDGTRVWFHdDGWQMFVEFYSVGLEYFLVFKYERQsSSF-- 115 67766.677788888***********87777888899999899********99888888666559*********************9876777.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v +f++ MELO3C020923P1 116 YVVIFDR 122 9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-17 | 19 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-19 | 19 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-18 | 22 | 121 | No hit | No description |
PROSITE profile | PS50863 | 11.674 | 23 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-10 | 24 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-12 | 24 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGSSSRPKND VVKQPCKASD NPHFFKVVSA RALKEQKLEI PRKFVREYGV KAFATNQICL 60 KVAADGRKWN VRLTKTNDGT RVWFHDDGWQ MFVEFYSVGL EYFLVFKYER QSSSFYVVIF 120 DRTATEIEYP MKIIICIDDA EEKVKKETNI SQELMDNKKK LRSTTTSQRE KAMANATAFQ 180 SMTINPSFLC KMSPSHIHRS LVSQIN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 0.0 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016902162.1 | 1e-150 | PREDICTED: B3 domain-containing protein At3g18960-like | ||||
TrEMBL | A0A1S4E1R1 | 1e-148 | A0A1S4E1R1_CUCME; B3 domain-containing protein At3g18960-like | ||||
STRING | XP_008457960.1 | 1e-145 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 7e-18 | B3 family protein |