PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C020782P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 130aa MW: 14526.5 Da PI: 4.9843 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.7e-09 | 51 | 100 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RR r+N+ f eL +l ++ +K++Ka+iL +++ +k+L MELO3C020782P2 51 RKVQKADREKLRRGRLNEQFVELGNILDPD----RPKNDKATILMDTIQLLKDL 100 5777889********************997....79**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-14 | 49 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.43 | 50 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-12 | 50 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.77E-6 | 51 | 104 | No hit | No description |
Pfam | PF00010 | 5.3E-7 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-5 | 56 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MDQLIQRDDL LQNPPTPSSS VVPCVELPGH PIRSQSSSRS EGEFKDSAAA RKVQKADREK 60 LRRGRLNEQF VELGNILDPD RPKNDKATIL MDTIQLLKDL TSQVDKLKAE YATLTEESQE 120 VIFCMCLSI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 1e-83 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 1e-83 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457648.1 | 3e-80 | PREDICTED: transcription factor bHLH121 isoform X1 | ||||
Swissprot | Q9LT23 | 6e-31 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A1S3C6M9 | 6e-79 | A0A1S3C6M9_CUCME; transcription factor bHLH121 isoform X1 | ||||
STRING | XP_008457648.1 | 1e-79 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 1e-33 | bHLH family protein |
Publications ? help Back to Top | |||
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