PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020781P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 334aa    MW: 36921 Da    PI: 4.9279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020781P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-0851100154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r++ +  rE+ RR r+N+ f eL  +l ++     +K++Ka+iL  +++ +k+L
  MELO3C020781P1  51 RKVQKADREKLRRGRLNEQFVELGNILDPD----RPKNDKATILMDTIQLLKDL 100
                     5677889********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1349120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1150122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.4350100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.50E-651104No hitNo description
PfamPF000102.9E-651100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-556106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDQLIQRDDL LQNPPTPSSS VVPCVELPGH PIRSQSSSRS EGEFKDSAAA RKVQKADREK  60
LRRGRLNEQF VELGNILDPD RPKNDKATIL MDTIQLLKDL TSQVDKLKAE YATLTEESQE  120
LAQEKSDLRE EKALLKSDIE NLNAQYQQKL RATYPWAAMD HSVVMAPAPF PFPMPMQIPP  180
GPYPLHPSLQ PYTFFGNPDP RVIANPCSTF VPYIPPNSLT EQQSSQNAPP FIQLDNRSRN  240
LSEQNTGSKS SSESKIEKSV DSNEVATCLE LKTPGSSTDQ DTSYEQTNDK NRKESNLSEE  300
SSSSRCSSSR SLEANSSSSM PSGRKSTDIC GSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457648.10.0PREDICTED: transcription factor bHLH121 isoform X1
SwissprotQ9LT232e-89BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1S3C6M90.0A0A1S3C6M9_CUCME; transcription factor bHLH121 isoform X1
STRINGXP_008457648.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-79bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]