PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C020619P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRAS

Protein Properties

Length: 699aa MW: 79435 Da PI: 6.3198

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C020619P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.7	2.9e-115	328	695	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla+yf+++L++rla ++ ly ++++ets +e l+a+++f +++P+ ++s++ MELO3C020619P1 328 TLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAA-GTPLYLPFASNETS---AAEILKAYQMFIKACPFRRMSYFY 418 69************************************************9.99999777777777...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N++Il+ +e+ +++Hi+Df+i +GlQWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++e+tg+rLa+++++++vpfe +v +a+++e+++ MELO3C020619P1 419 GNRTILKLAEKVSTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGfrPAERVEQTGRRLAHYCKRFNVPFEHKV-LAQKWETVR 512 ***************************************************9************************9.6**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L+++++E ++V +++++++++de+v +s+rd+vLkl+++++P+++++ + + n++ F +rf eal yys+lfd++ea++pr++ +r MELO3C020619P1 513 YEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRFLC 607 ******************************************************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 E+e+lgr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++ k+++ ++++ + + ++++++ ++++gWk+r + ++S+W MELO3C020619P1 608 EKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFNIDQDGSWMLQGWKGRIIDALSCW 695 ******************************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.401	300	676	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-112	328	695	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MDNLLDDFPN SWNNTYPFHP HLSTSLFKVT RDVVDPLQIP AKSHQHQHQH RQLTNNSSSS 60 PSSSSSEGDS PDSHDTSNTM LKYITEMLMD EGEDLKTQPC MLLDCLALQA AEKSFYDVLG 120 QKYPPSPIGD SSCCDRGLGG EDESESFNGN SDSSFFHPFQ NSVLSQDSFL GMQFLGHFRQ 180 GAEEASKFLP VNGRFGTIDL DNDSSSSTSF PSRPVDFSWV AAENDGRSSL ENGLLREKKN 240 RLREDSDEEL RSSKQSANFA DDNSLSDLFD EVLLCRGESR QSPPSCGSDE SSESEANKKS 300 RGRGKRKGKK SSRSRKQENS VEVVDLWTLL TQCAQAVSNY DQRTANELLN QIRQHSNPSG 360 DGNQRLAHYF AKGLETRLAA GTPLYLPFAS NETSAAEILK AYQMFIKACP FRRMSYFYGN 420 RTILKLAEKV STLHIVDFGI LYGLQWPCLI QRLSRRPGGP PKLRITGIEL PQPGFRPAER 480 VEQTGRRLAH YCKRFNVPFE HKVLAQKWET VRYEDLNLDR DELTIVTCMF RMKNVPDETV 540 VANSPRDRVL KLIRKINPDL FIHEVTNGSF NTPFFNTRFK EALFYYSSLF DMYEATVPRD 600 NPQRFLCEKE ILGRDIMNVI ACEGLERVER PETYKQWQVR NTRAGFKQVP LDQDLLKSVE 660 KIVNTEYHQD FNIDQDGSWM LQGWKGRIID ALSCWVVA*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MDNLLDDFPN SWNNTYPFHP HLSTSLFKVT RDVVDPLQIP AKSHQHQHQH RQLTNNSSSS  60
PSSSSSEGDS PDSHDTSNTM LKYITEMLMD EGEDLKTQPC MLLDCLALQA AEKSFYDVLG  120
QKYPPSPIGD SSCCDRGLGG EDESESFNGN SDSSFFHPFQ NSVLSQDSFL GMQFLGHFRQ  180
GAEEASKFLP VNGRFGTIDL DNDSSSSTSF PSRPVDFSWV AAENDGRSSL ENGLLREKKN  240
RLREDSDEEL RSSKQSANFA DDNSLSDLFD EVLLCRGESR QSPPSCGSDE SSESEANKKS  300
RGRGKRKGKK SSRSRKQENS VEVVDLWTLL TQCAQAVSNY DQRTANELLN QIRQHSNPSG  360
DGNQRLAHYF AKGLETRLAA GTPLYLPFAS NETSAAEILK AYQMFIKACP FRRMSYFYGN  420
RTILKLAEKV STLHIVDFGI LYGLQWPCLI QRLSRRPGGP PKLRITGIEL PQPGFRPAER  480
VEQTGRRLAH YCKRFNVPFE HKVLAQKWET VRYEDLNLDR DELTIVTCMF RMKNVPDETV  540
VANSPRDRVL KLIRKINPDL FIHEVTNGSF NTPFFNTRFK EALFYYSSLF DMYEATVPRD  600
NPQRFLCEKE ILGRDIMNVI ACEGLERVER PETYKQWQVR NTRAGFKQVP LDQDLLKSVE  660
KIVNTEYHQD FNIDQDGSWM LQGWKGRIID ALSCWVVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-46	330	695	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681926	0.0	LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457465.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A1S3C6V5	0.0	A0A1S3C6V5_CUCME; scarecrow-like protein 14
STRING	XP_008457465.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-178	GRAS family protein