PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020166P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 293aa    MW: 32407.7 Da    PI: 5.4024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020166P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY703.4e-22122184259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                     +D+y WrKYGqK+++++++prsYYrCt++   gC+++k+v+r +  + + + +itY ++H+++
  MELO3C020166P1 122 EDEYGWRKYGQKVIHNTTYPRSYYRCTHKydqGCQATKQVQRMEgsDSEAMYKITYISDHTCR 184
                     7***************************99999*********8632567899********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-24107186IPR003657WRKY domain
SuperFamilySSF1182904.18E-22115186IPR003657WRKY domain
PROSITE profilePS5081117.97116186IPR003657WRKY domain
SMARTSM007741.6E-29121185IPR003657WRKY domain
PfamPF031063.2E-22122184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEAPEFSHGR ILPAELRRKI TAKLLPGQDS AAHLQTLLQS AAATEQDKRA LATKILTSIT  60
EAISILESAA GEELSCPDNS LCSDLDSDDS RRSTGVKNNP SRANKRRRSM NTRFVRTSRT  120
TEDEYGWRKY GQKVIHNTTY PRSYYRCTHK YDQGCQATKQ VQRMEGSDSE AMYKITYISD  180
HTCRRPASPI DASAIATPSD SSNLISFSND CNAPLTEGTG YSLISWPSDH DDAIKVGETA  240
TTSGSTGHEI DLWSDLKEFG SFQTTAMTTT TANPYYFSTA DDDADSLMFW EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19119184669OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819000.0LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456968.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 70
TrEMBLA0A1S3C4E80.0A0A1S3C4E8_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 70
STRINGXP_008456968.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2455633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-26WRKY DNA-binding protein 70