PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C020162P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 183aa MW: 19977.8 Da PI: 8.9092 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 31.4 | 3.8e-10 | 157 | 177 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDg++WrKYGqKe+ gs+fpr MELO3C020162P1 157 DDGFTWRKYGQKEILGSRFPR 177 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.0E-8 | 152 | 177 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-7 | 153 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-6 | 157 | 177 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.328 | 157 | 177 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEEAISLILR GCSLARQLEF NVLNLGNNNI NMSDQSHFMA RSCDEILGVF SAAKDRLSSH 60 EPPPLTAVQG EVGLEEWLKS TCSQAMELAQ MQTRSPSPPS AIVTVPAAVK DSGKLMAMGF 120 SSSSSSSTKA RRRKDDMEKR TVRVGAPRIG NTELPPDDGF TWRKYGQKEI LGSRFPRLST 180 VF* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681900 | 0.0 | LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456967.1 | 1e-127 | PREDICTED: WRKY transcription factor 55 | ||||
TrEMBL | A0A1S3C4H9 | 1e-126 | A0A1S3C4H9_CUCME; WRKY transcription factor 55 | ||||
STRING | XP_008456967.1 | 1e-127 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8629 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 8e-23 | WRKY DNA-binding protein 55 |