PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020079P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 395aa    MW: 44650.2 Da    PI: 9.1536
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020079P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.96.4e-1958151286
        trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                     Wt qe++ Li+a++ ++er ++++              + +W++v ++++++g++rs++qC++kw+nl ++ykk++e e++  ++++  +p + +
  MELO3C020079P1  58 WTLQETMILITAKKLDDERRNKANlgpstvdpaarkGGELRWKWVENYCWSHGCQRSQNQCNDKWDNLLRDYKKVREYESRA-CDQQ--IPSYWK 149
                     **************99999999866667777777657799****************************************95.6665..899999 PP

        trihelix  85 le 86 
                     +e
  MELO3C020079P1 150 ME 151
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.96950126IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-652128IPR009057Homeodomain-like
PfamPF138371.4E-1257151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSDPPTTSSE PPHHQQQQQH LPRLPVIHGG ASGATRMNTA AATSSSAVIV REYRKGNWTL  60
QETMILITAK KLDDERRNKA NLGPSTVDPA ARKGGELRWK WVENYCWSHG CQRSQNQCND  120
KWDNLLRDYK KVREYESRAC DQQIPSYWKM EKHERKDKNL PSNMAFEVYQ ALNDVVQRKF  180
SQKPSNSSNT GILLLPLPAP PPSTLLPPPT ATNSPQLSES SSSGTESSEK KEKMEAKRRK  240
MEDNIGRRIE RSVSALGQTL HSCEEQREIR HQQLMELRKR RLQIEETRNH IHRQGIADLV  300
AAVANLSAGI DNNRRGRSEG YESCLYSGEE VRILKEQNEA MQAELMNVKN ELSQLRDQMP  360
SLMQTMMHSM IHNIPPPPPP STSSMDPSGS GRDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819000.0LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456886.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A1S3C4820.0A0A1S3C482_CUCME; trihelix transcription factor PTL-like
STRINGXP_008456886.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-47Trihelix family protein