PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019666P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 324aa    MW: 37232.3 Da    PI: 6.6703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019666P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.5e-49171453128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     pGfrFhPtdeelv++yL++kv++k+l++ e ik++diyk+ PwdLp++ ++   +ekewyfF+kr +ky+++ r+nr+t  g+Wkatg dk+++s
  MELO3C019666P1  17 PGFRFHPTDEELVNFYLRRKVHNKPLPI-ELIKQIDIYKYSPWDLPHASNSgtlGEKEWYFFCKRGRKYKNSVRPNRVTGCGFWKATGIDKPIYS 110
                     9***************************.89***************53333345889************************************** PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +  lvglkktLv+y+g+a +g+kt+W+m+e+rl
  MELO3C019666P1 111 NdRCVLVGLKKTLVYYRGSAGRGTKTEWMMNEFRL 145
                     855567***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5415177IPR003441NAC domain
PROSITE profilePS5100553.03115177IPR003441NAC domain
PfamPF023653.1E-2517145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAAIDNNDND DSQFPLPGFR FHPTDEELVN FYLRRKVHNK PLPIELIKQI DIYKYSPWDL  60
PHASNSGTLG EKEWYFFCKR GRKYKNSVRP NRVTGCGFWK ATGIDKPIYS NDRCVLVGLK  120
KTLVYYRGSA GRGTKTEWMM NEFRLPSSSS SDPFRRNIVK NNLHEAEIWT LCRIFKRNIS  180
AKKAINAPNW RDVPSAKISR AVENMNFRAT NNIDIDTYSD DHEQSSYISF TSNNSFIHFD  240
HMNGVQNFDQ SQMSHDSQMM TNFCSSSSDH QLSSADHNSS ANVSPSSSSF SDFDEDASDL  300
FGYEKWEELK SILECDFDSC NQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-481718319171NO APICAL MERISTEM PROTEIN
1ut4_B7e-481718319171NO APICAL MERISTEM PROTEIN
1ut7_A7e-481718319171NO APICAL MERISTEM PROTEIN
1ut7_B7e-481718319171NO APICAL MERISTEM PROTEIN
4dul_A7e-481718319171NAC domain-containing protein 19
4dul_B7e-481718319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456334.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S3C3270.0A0A1S3C327_CUCME; transcription factor JUNGBRUNNEN 1-like
STRINGXP_008456334.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]