PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019665P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 325aa    MW: 37380.1 Da    PI: 8.888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019665P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.22.8e-48191473128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                     pGfrFhPtdeelv++yL++kv++k+++l e ik++diy+++PwdLp  +++++eke+y F+kr +ky+++ r+nr+t +g+Wkatg dk+++s+ 
  MELO3C019665P1  19 PGFRFHPTDEELVDYYLRRKVDKKSVTL-ELIKHIDIYRHNPWDLPyGSAATGEKECYVFVKRGRKYKNSVRPNRVTGAGFWKATGIDKPIYSQe 112
                     9************************999.89***************667778999**************************************97 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +glkktLvfykg+a +g+kt+W+mhe+rl
  MELO3C019665P1 113 geGNRCIGLKKTLVFYKGSAGRGVKTEWMMHEFRL 147
                     666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5217175IPR003441NAC domain
PROSITE profilePS5100551.10517175IPR003441NAC domain
PfamPF023656.4E-2419147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATTSPPDLD MDDYQFPLPG FRFHPTDEEL VDYYLRRKVD KKSVTLELIK HIDIYRHNPW  60
DLPYGSAATG EKECYVFVKR GRKYKNSVRP NRVTGAGFWK ATGIDKPIYS QEGEGNRCIG  120
LKKTLVFYKG SAGRGVKTEW MMHEFRLPPT TSSTSHFSKT EQEAEIWTLC RIFKRNVTCR  180
RYNWKEIPGS NREMTKITKI CSNVVNHDQS SYDGVDQRAT YISFSSNNSY NGFELEKKPF  240
LACEVKKKQW EEFTMKKKKM KRNNSEIAAE VISVSPPLSV NQSPASSGFS NFDENGTQFF  300
GSSDDWEELR SIVDFSFDPF SNNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-451917517168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150047.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A0A0KEH50.0A0A0A0KEH5_CUCSA; Uncharacterized protein
STRINGXP_004150047.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-80NAC domain containing protein 42