PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019502P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 466aa    MW: 52646.2 Da    PI: 6.6176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019502P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.6e-1781170299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +kv++ps+v+   +l lpk f++ h ++k +++ ++lede+g+ +e k+  +k++    l++GW++F  a++L +gD++vF+l+  ++f  +v +
  MELO3C019502P1  81 IKVMLPSHVTGGFWLGLPKGFCDIH-LPK-QDTAMVLEDENGKLYETKYLSDKTG----LSAGWRGFSIAHKLLQGDVIVFHLVLPNKF--MVYI 167
                     699*******************655.554.6789***************656665....***********************9976777..9988 PP

                     E-S CS
              B3  97 frk 99 
                     +r+
  MELO3C019502P1 168 VRS 170
                     876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-1972171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2273171IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-2478169No hitNo description
PROSITE profilePS5086312.60580171IPR003340B3 DNA binding domain
SMARTSM010199.1E-2180171IPR003340B3 DNA binding domain
PfamPF023621.0E-1481170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNQWRPGKKE KLFRRKTWVS STQPSTSYDQ DAVHSFSQPR SVKLKRTTVD SLYHDLEAQS  60
VVMARAKEVQ AKLSPSHPSL IKVMLPSHVT GGFWLGLPKG FCDIHLPKQD TAMVLEDENG  120
KLYETKYLSD KTGLSAGWRG FSIAHKLLQG DVIVFHLVLP NKFMVYIVRS NSAAKVDGAL  180
GLKYEASNKQ TPIYSKENIP CVKEEQITLE DVNAEETNIV PVKEETEEDH NPVSLPMDIH  240
DEREQTNSHV LLDTEMMPVL EESENERRSC GSNSKNGIRL SDSRLAFDKV NSLDDFIISV  300
NGLIIDSEFS NHIRAKYYEL CCSQKSFLHD HILEGLNYKL VSGIISETVN IADAIRASKV  360
TTSQEHLVTW DKTLTAFEGL GMNVGFLRVR INQLLTLSLK PEKKKEAEMM RDSKQEELHI  420
LLTKIMEGRT MVRQLEAKIS SLDTDIKHMD KLFKEVASAP WCLEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456112.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A1S3C2200.0A0A1S3C220_CUCME; B3 domain-containing protein Os01g0234100-like isoform X1
STRINGXP_008456112.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-38B3 family protein