PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018946P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 392aa    MW: 44187.1 Da    PI: 6.4078
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018946P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081636323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+ksFs+   L  H+r+H
  MELO3C018946P1 16 CKLCNKSFSNGKVLGGHMRSH 36
                    *******************99 PP
2zf-C2H214.69.5e-0584104323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F ++  L  H+r H
  MELO3C018946P1  84 CKICGKGFESSKALFGHMRHH 104
                     *******************99 PP
3zf-C2H2171.7e-05114135223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ C+k F +  +L++H+++H
  MELO3C018946P1 114 QCKECNKEFENLKSLTSHMKSH 135
                     7********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-5837IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.8E-61039No hitNo description
PfamPF139122.9E-81437IPR007087Zinc finger, C2H2
SMARTSM003550.111436IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2631441IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM003550.02782104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.11382109IPR007087Zinc finger, C2H2
SuperFamilySSF576673.14E-983135No hitNo description
PfamPF139122.3E-683106IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-484107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-6113137IPR007087Zinc finger, C2H2
SMARTSM003550.0022113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325113135IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-4114136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037319341IPR007087Zinc finger, C2H2
PfamPF139121.8E-11319341IPR007087Zinc finger, C2H2
SMARTSM003550.99319341IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MELQLQDHQE QKQHLCKLCN KSFSNGKVLG GHMRSHRTNQ NPPKKRKKNS ISGSYSLREN  60
PKKSWKFSAP NGESGENPPQ ENHCKICGKG FESSKALFGH MRHHSGRRKE PSRQCKECNK  120
EFENLKSLTS HMKSHCQSSV VGTDQSEGET LGLLRRKRSR RTRFKLGGSN YPYCCSSSSD  180
LIEYSSSSLV DGIEHDVEEL ALSLLMLSKG VGNFGAEFSS ESNGGSHFRC FEAKSPLYRT  240
AHFEEEKDRV KMEFQEVGRY YAGVELGMPK LNDADENETG FCEIGRKNGL KSLKKGDIED  300
FCVKACEDEV VGEMEEGKHQ CDVCLKVFGS GQALGGHKRA HLLKPNLMEL EEDDENQNQD  360
EEEDDDEFKT WWNGDDENEQ QQQVVALVSS N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455588.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S3C1Z30.0A0A1S3C1Z3_CUCME; zinc finger protein ZAT1-like
STRINGXP_008455588.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.19e-13C2H2-like zinc finger protein