PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018792P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 313aa    MW: 34644.1 Da    PI: 5.3945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018792P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-091862261055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+++ ++   L++llP++     kK++ a++Le+A++Y+k Lq
  MELO3C018792P1 186 RQRRQKLSDKTRCLQKLLPWD-----KKMDIATMLEEACKYVKFLQ 226
                     9*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.411176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-10179234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-7182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-10184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-8185229No hitNo description
PfamPF000104.4E-6186226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESSPGDDAS SSVWDDACFN AMFSDVSFQS FLAAGNHSQF GGGYIADALT FPDATTSFYP  60
QPSTNFAAEC TDSSDGPFFK LPKSEPMDVY EDTETKEPAF VLHDSTSFPH LPDLRSLEQR  120
SSSFNKRARV DSMSNPLQMV EPMVRGCEGF QNFFVPYGQY KTSSDLITTS ATASPTVQIP  180
RSTFARQRRQ KLSDKTRCLQ KLLPWDKKMD IATMLEEACK YVKFLQAQLL ALQSMPCESA  240
LSSYNSSNPY ITGVFGGLER LNRNQLLQVL VNSPVAQTML CSQSCCVFSA EQLGLIQKIA  300
EKRVLPTFHP KP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455394.10.0PREDICTED: transcription factor bHLH117
TrEMBLA0A1S3C0Y60.0A0A1S3C0Y6_CUCME; transcription factor bHLH117
STRINGXP_008455394.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.17e-21bHLH family protein